Stem-loop ghr-MIR7501

Accession

MI0024190

Description

Gossypium hirsutum ghr-MIR7501 precursor miRNA

Sequence

4622 reads, 248.0 reads per million, 50 experiments

cggggacccacuUUUUCGUGUCAGAAUCAGAUAUaaaaauacgaaaaaaauaaaaaaaauuuuauaggacuugggggauuuuaauauauaaacuaaauucuaaauuuacaaaaaaauauauaggacuugggggauuuuaauuuuguaauaguaaauaggaggaaauagaaauuuuuuuuacuuuuuuucauauuuuuauaucuaauucugacacgaaaaaaaaauuuacuguucacugggugccggccauugauaggccaacacccaaauuuuuuuuuuuuccuauuuuAUAUCUGAUUCUGACACGAAAAAAaagaaaaaaa
.((....))..(((((((((((((((((((((((((((.((.((((((((.((((.........(((((.((((...((........))...)))).)))))....................((((..((..((((((..((((((..(((.((.((((.(((((((((((..............)))).)))))))...)))).)))))..))))))..))))))..))))))..((((((..((((.......))))..))))))..)))).)))))))).)))))))))))))))))))))))))))))...........

Structure

cggggacccac                           a  c        u    aaaauuuuauaggacuugggggauuuuaauauauaaacuaaauucuaaauuuacaaaaaaauauaua    uu  gg      aa      aa   u  a    --a       -    uuuuuu 
           uUUUUCGUGUCAGAAUCAGAUAUaaaa ua gaaaaaaa aaaa                                                                   ggac  gg  gauuuu  uuuugu  uag aa uagg   ggaaaua gaaa      u
           ||||||||||||||||||||||||||| || |||||||| ||||                                                                   ||||  ||  ||||||  ||||||  ||| || ||||   ||||||| ||||       
           AAAAAGCACAGUCUUAGUCUAUAuuuu au cuuuuuuu uuuu                                                                   cuug  uc  uuaaaa  aaagca  guc uu aucu   uuuuuau cuuu      u
aaaaaaagaaA                           -  c        u    --------------------------------aaacccacaaccggauaguuaccggccguggguca    --  au      aa      ca   -  a    aua       a    uuuuca 

Annotation confidence Medium

Genome context

Unknown

Mature ghr-miR7501-5p

• Accession: MIMAT0055333
• Description: Gossypium hirsutum ghr-miR7501-5p mature miRNA
• Sequence: 13 - UUUUCGUGUCAGAAUCAGAUAU - 34
• Evidence: experimental ; unknown

Mature ghr-miR7501-3p

• Accession: MIMAT0029148
• Description: Gossypium hirsutum ghr-miR7501-3p mature miRNA
• Sequence: 290 - AUAUCUGAUUCUGACACGAAAAAA - 313
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22138860
   A comparative miRNAome analysis reveals seven fiber initiation-related and 36 novel miRNAs in developing cotton ovules
   "Wang ZM, Xue W, Dong CJ, Jin LG, Bian SM, Wang C, Wu XY, Liu JY"
   "Mol Plant (2012) 5:889-900