Stem-loop ghr-MIR7509

Accession

MI0024198

Description

Gossypium hirsutum ghr-MIR7509 precursor miRNA

Literature search

1 open access papers mention ghr-MIR7509
(1 sentences)

Sequence

10584 reads, 429.0 reads per million, 50 experiments

uaguguuuaucauuacugucaaaaagcgcuuuugagaagauaaaaugucaauuuuaaacaugauguuauaauugaaagauuuaaugggagauaaaaaaaaaguaacuucauugaaaaauacuuuuccaaaagccgaagguuaaaaauuuuggcuuuuuggcuuggguuagaaucacaauuuaaaaucAUGGUUUGGUUUGAAGAGCUCUUUguuuaccaaauuuuuuguuuacuauuaaggcuugaaagcaguaaacaacaaaaauuugguaagcaagcggggguuuaaaccgaacaugauuuggagaggggggauuuuaaccaagcuaaaaauuuuggaaaaguauuuuucaacaaaguuacuuuuuucaucucccauuaaaucuuucacuuuauggcaucaugucuaaaauugacauuuuauauuuUCAAAAGCACUUUUUGACAGCAAUgguaaacauu
.(((((((((((((.(((((((((((.(((((((((((.(((((((((((((((((.((((((((((((((.((((((((((((((((((((...(((((((((((((..((((((((((((((((((((((((((((........)))))))((((((((((((.((((((((.(..(((.((((((((.(((((((((((...(((((((((((((((((((((((((((((......(((....)))))))))))..)))))))))))))))))).)))..)))))))))))))))))))..)))..)..)))))))))))))))))))))))))))))))))))))))))..))))))))))))).))))))))))))))))))))..)))))))))))))).))))))))))))))))).))))))))))).))))))))))).)))))))))))))

Structure

u             a           c           g                 a              -u                    aaa             ca                     gccgaagguuaaaaauuuuggc            g        -a aa   -a        G           GAG   -                  --        auuaag   u 
 aguguuuaucauu cugucaaaaag gcuuuugagaa auaaaaugucaauuuua acaugauguuauaa  ugaaagauuuaaugggagau   aaaaaaguaacuu  uugaaaaauacuuuuccaaaa                      uuuuuggcuugg uuagaauc  c  uuu  aaaucAUG UUUGGUUUGAA   CUC UUUguuuaccaaauuuuu  uguuuacu      gcu g
 ||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||  ||||||||||||||||||||   |||||||||||||  |||||||||||||||||||||                      |||||||||||| ||||||||  |  |||  |||||||| |||||||||||   ||| ||||||||||||||||||  ||||||||      |||  
 uuacaaauggUAA GACAGUUUUUC CGAAAACUuuu uauuuuacaguuaaaau uguacuacgguauu  acuuucuaaauuacccucua   uuuuuucauugaa  aacuuuuuaugaaaagguuuu                      aaaaaucgaacc aauuuuag  g  aga  uuuaguac aagccaaauuu   ggg gaacgaaugguuuaaaaa  acaaauga      cga a
-             C           A           a                 c              uc                    --c             ac                     ----------------------            -        gg gg   gg        -           -gg   c                  ca        ------   a 

Annotation confidence Low

Genome context

Unknown

Mature ghr-miR7509-5p

• Accession: MIMAT0055339
• Description: Gossypium hirsutum ghr-miR7509-5p mature miRNA
• Sequence: 188 - AUGGUUUGGUUUGAAGAGCUCUUU - 211
• Evidence: experimental ; unknown

Mature ghr-miR7509-3p

• Accession: MIMAT0029156
• Description: Gossypium hirsutum ghr-miR7509-3p mature miRNA
• Sequence: 429 - UCAAAAGCACUUUUUGACAGCAAU - 452
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22138860
   A comparative miRNAome analysis reveals seven fiber initiation-related and 36 novel miRNAs in developing cotton ovules
   "Wang ZM, Xue W, Dong CJ, Jin LG, Bian SM, Wang C, Wu XY, Liu JY"
   "Mol Plant (2012) 5:889-900