Stem-loop ghr-MIR7512

Accession

MI0024203

Description

Gossypium hirsutum ghr-MIR7512 precursor miRNA

Sequence

augccaguuuuucacucaugcauggaugcuuuucaguuaacauguagaacuacaagcagcaaccaccaugcuucagcauaaauaugguagauggugacuuaagauaacgguucaaugcuuaugaaugagacuuuccucugugucucuguguguauguaugagugcgaaauugagagagagaaacagagaaguccaaugauggcgaguuagauaaugccaguuuuccagucaugcauggaugccuucccaagggugcgaaagcgaaaaguuguugaacuaucugaaauccugcugaugcauggugguUGCUACUUGUAGUUAUGCAUGuuaaccaaaa
((((.(((.....)))...))))............(((((((((((.(((((((((.((((((((((((((.((((((.........((((((((.......((((((..(((............((.(((((..((((((.(((((.(.(((((......)))).......).).))))).)))))))))))))....((((............))))((((((((.((.((...(((.....))))).)).)).)))))))))..))))))..))))))))......)))))).)))))))))))))).))))))))).))))))))))).....

Structure

augccaguuuuucacucaugcauggaugcuuuuca           g         c              u      uaaauaugg        gacuuaa      gg   -------------------------------------------------------aaugcuuaugaa  a     uc      g     g g -------    gu 
                                   guuaacaugua aacuacaag agcaaccaccaugc ucagca         uagauggu       gauaac  uuc                                                                   ug gacuu  cucugu ucucu u u       guau  a
                                   ||||||||||| ||||||||| |||||||||||||| ||||||         ||||||||       ||||||  |||                                                                   || |||||  |||||| ||||| | |       ||||   
                                   caauuGUACGU UUGAUGUUC UCGUuggugguacg agucgu         gucuauca       uuguug  aag                                                                   ac cugaa  gagaca agaga a a       cgug  u
------------------------------aaaac           A         A              u      ---ccuaaa        -----ag      aa   cgaaagcgugggaacccuuccguagguacguacugaccuuuugaccguaauagauugagcgguagua  -     --      a     g g guuaaag    ag 

Annotation confidence Not enough data

Genome context

Unknown

Mature ghr-miR7512

• Accession: MIMAT0029161
• Description: Gossypium hirsutum ghr-miR7512 mature miRNA
• Sequence: 307 - UGCUACUUGUAGUUAUGCAUG - 327
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22138860
   A comparative miRNAome analysis reveals seven fiber initiation-related and 36 novel miRNAs in developing cotton ovules
   "Wang ZM, Xue W, Dong CJ, Jin LG, Bian SM, Wang C, Wu XY, Liu JY"
   "Mol Plant (2012) 5:889-900