Stem-loop ghr-MIR7514

Accession

MI0024206

Description

Gossypium hirsutum ghr-MIR7514 precursor miRNA

Literature search

2 open access papers mention ghr-MIR7514
(4 sentences)

Sequence

1890 reads, 86.0 reads per million, 48 experiments

aauccuuauggagacgauacuuacuuaucacuuuauUACUUGAAUGACGUGUACACUUGCacaauugcauuaguuauuuucaugcaacauuacacacucaagaucuuuucuuauuaaauaguuucccaagaaacgauauuuuagcuagagaugauggccaaauguuaaaacgguuguugguucauguggagucuuaagaauucagauucacgaacugguuggaugugauccauguucuugcuaguuaaucaugagacccuaagacgacaugauugaugggugugagaaugaucauagcaaugaaaaaauaguuuuucaagguuuucauacaagacacaugcaucugucacgugugaaaugauaugugaauugugcaguauacauggaaucaaguAUAAAGUGAUAAGUGAGAUCGUCUcacagggacc
..(((((...((((((((.(((((((((((((((((.((((((.(..((((((.(((.((((((((((((..(((((((((((((..(((((..........(((.(((((..(((((..(((((....))))).....)))))..))))).))).(((((...............)))))((((((...((((((.(..((((((((....(((((((.(((((((...)))))))..))))))))))).))))..).)))))).)))))).))))).)))))))))))))....((..(((((((....)))))))..))((((((((..((((........))))..))))))))....)))).))))))))))).))))))..))))))))))))))))))))))))))))))))..)))))..

Structure

aa     aug        a                 U      A GA      C   U        -    --------------------------------------------------------------------ua             aa     cacacucaagaucuuuucuuauuaaauaguuucccaagaaacgauauuuuagcuagagaugauggccaaauguuaaaacgguuguuggu      gga      a aa    -    cacg       -u       a 
  uccuu   gagacgau cuuacuuaucacuuuau ACUUGA U  CGUGUA ACU GCacaauu gcau                                                                      guuauuuucaugc  cauua                                                                                         ucaugu   gucuua g  uuca gauu    aacuggu  ggaugug  
  |||||   |||||||| ||||||||||||||||| |||||| |  |||||| ||| |||||||| ||||                                                                      |||||||||||||  |||||                                                                                         ||||||   |||||| |  |||| ||||    |||||||  ||||||| u
  aggga   cUCUGCUA GAGUGAAUAGUGAAAUA ugaacu a  guacau uga cguguuaa ugua                                                                      uaguaagagugug  guagu                                                                                         aguaca   cagaau c  gagu cuaa    uugaucg  cuuguac  
cc     -ca        -                 -      - ag      a   -        g    uaguaaagugugcacugucuacguacacagaacauacuuuuggaacuuuuugauaaaaaaguaacgauac             -g     ----------------------------------------------------------------------------------------u      --g      c ca    a    ----       uu       c 

Annotation confidence Low

Genome context

Unknown

Mature ghr-miR7514-5p

• Accession: MIMAT0055344
• Description: Gossypium hirsutum ghr-miR7514-5p mature miRNA
• Sequence: 37 - UACUUGAAUGACGUGUACACUUGC - 60
• Evidence: experimental ; unknown

Mature ghr-miR7514-3p

• Accession: MIMAT0029164
• Description: Gossypium hirsutum ghr-miR7514-3p mature miRNA
• Sequence: 395 - AUAAAGUGAUAAGUGAGAUCGUCU - 418
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22138860
   A comparative miRNAome analysis reveals seven fiber initiation-related and 36 novel miRNAs in developing cotton ovules
   "Wang ZM, Xue W, Dong CJ, Jin LG, Bian SM, Wang C, Wu XY, Liu JY"
   "Mol Plant (2012) 5:889-900