miRBase entry: cbn-mir-64d-1

Stem-loop cbn-mir-64d-1

Accession

MI0024853

Description

Caenorhabditis brenneri cbn-mir-64d-1 precursor miRNA

Sequence

UAUGACACAUAAGCGUAGUUGGAccauccaagaacauaggauccaaccaugauauguggaauagu
(((..((((((..(((.((((((...(((.........))))))))).))).))))))..)))..

Structure

--   GA      AG   A      cca   aag 
  UAU  CACAUA  CGU GUUGGA   ucc   a
  |||  ||||||  ||| ||||||   |||   a
  aua  guguau  gua caaccu   agg   c
ug   ag      -a   c      ---   aua

Annotation confidence Not enough data

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Genome context

Cbre_Contig274: 39055-39119 [-]

Clustered miRNAs

13 other miRNAs are < 10 kb from cbn-mir-64d-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cbn-miR-64d

Accession	MIMAT0029703
Description	Caenorhabditis brenneri cbn-miR-64d mature miRNA
Sequence	1 - UAUGACACAUAAGCGUAGUUGGA - 23
Evidence	experimental Illumina [1]

References

PubMed ID: 23363624
High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
"Shi Z, Montgomery TA, Qi Y, Ruvkun G"
"Genome Res (2013) 23:497-508