miRBase entry: cbn-mir-790-2

Stem-loop cbn-mir-790-2

Accession

MI0024930

Description

Caenorhabditis brenneri cbn-mir-790-2 precursor miRNA

Sequence

CUUGGCACUCGCGAACACCGCGAucuaacuguauaaaucgcggcguuagcucguggcaaaca
.(((.(((..((.(((.(((((((.((......)).))))))).))).))..))).)))...

Structure

--C   G   UC  G   A       c  ac 
   UUG CAC  GC AAC CCGCGAu ua  u
   ||| |||  || ||| ||||||| ||   
   aac gug  cg uug ggcgcua au  g
aca   g   cu  a   c       a  au

Annotation confidence Not enough data

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Genome context

Cbre_Contig67: 887165-887226 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cbn-mir-790-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cbn-miR-790

Accession	MIMAT0029749
Description	Caenorhabditis brenneri cbn-miR-790 mature miRNA
Sequence	1 - CUUGGCACUCGCGAACACCGCGA - 23
Evidence	experimental Illumina [1]

References

PubMed ID: 23363624
High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
"Shi Z, Montgomery TA, Qi Y, Ruvkun G"
"Genome Res (2013) 23:497-508