miRBase entry: bma-mir-1175

Stem-loop bma-mir-1175

Accession

MI0026288

Description

Brugia malayi bma-mir-1175 precursor miRNA

Sequence

aagauauuuuggacggucacgaaaguggagguuaggaucugcacuaaacauuucaaaucagUGAGAUUCUUAUUCCUCCACUUACuugccuguucucuaucugcauuc
.(((((....((((((.((.(.(((((((((..(((((((.((((..............)))))))))))....))))))))).).)).))))))..)))))......

Structure

-----a     uuuu      u  c a         --uu       g    aaacau 
      agaua    ggacgg ca g aaguggagg    aggaucu cacu      u
      |||||    |||||| || | |||||||||    ||||||| ||||       
      ucuau    cuuguc gu C UUCACCUCC    UCUUAGA GUga      u
cuuacg     --cu      c  u A         UUAU       -    cuaaac

Annotation confidence Not enough data

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Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold43: 83421-83528 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bma-mir-1175

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature bma-miR-1175

Accession	MIMAT0031739
Description	Brugia malayi bma-miR-1175 mature miRNA
Sequence	62 - UGAGAUUCUUAUUCCUCCACUUAC - 85
Evidence	experimental Illumina [2]

References

PubMed ID: 22216965
Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
BMC Genomics (2012) 13:4

PubMed ID: 24824352
Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
PLoS One (2014) 9:e96498