Stem-loop bma-mir-1175

Accession

MI0026288

Description

Brugia malayi bma-mir-1175 precursor miRNA

Sequence

7642 reads, 563.0 reads per million, 23 experiments

aagauauuuuggacggucacgaAAGUGGAGGUUAGGAUCUGCACUaaacauuucaaaucagUGAGAUUCUUAUUCCUCCACUUACuugccuguucucuaucugcauuc
.(((((....((((((.((.(.(((((((((..(((((((.((((..............)))))))))))....))))))))).).)).))))))..)))))......

Structure

-----a     uuuu      u  c a         --UU       G    aaacau 
      agaua    ggacgg ca g AAGUGGAGG    AGGAUCU CACU      u
      |||||    |||||| || | |||||||||    ||||||| ||||       
      ucuau    cuuguc gu C UUCACCUCC    UCUUAGA GUga      u
cuuacg     --cu      c  u A         UUAU       -    cuaaac 

Annotation confidence High

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold43: 83421-83528 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bma-mir-1175

Mature bma-miR-1175-5p

• Accession: MIMAT0057239
• Description: Brugia malayi bma-miR-1175-5p mature miRNA
• Sequence: 23 - AAGUGGAGGUUAGGAUCUGCACU - 45
• Evidence: experimental ; Illumina [2]

Mature bma-miR-1175-3p

• Accession: MIMAT0031739
• Description: Brugia malayi bma-miR-1175-3p mature miRNA
• Sequence: 62 - UGAGAUUCUUAUUCCUCCACUUAC - 85
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498