Stem-loop bma-mir-1822

Accession

MI0026289

Description

Brugia malayi bma-mir-1822 precursor miRNA

Literature search

1 open access papers mention bma-mir-1822
(1 sentences)

Sequence

1406 reads, 154.0 reads per million, 20 experiments

uacuuaugggcacguugugcguaCGUCUUUCACCUGUUCAGCUAUCGGuuugaaauuuguauuuuuuguccGAGCUGCCCCUUGAAAGACUAAugccaccgaugcccucuucucuc
.......(((((((.((.((((..((((((((......((((..((((...(((((....)))))....)))))))).....))))))))..)))))).)).))))).........

Structure

--uacuuau     -  u  u    aC        CCUGUU    UA    -uuu     u 
         gggca cg ug gcgu  GUCUUUCA      CAGC  UCGG    gaaau u
         ||||| || || ||||  ||||||||      ||||  ||||    |||||  
         cccgu gc ac cguA  CAGAAAGU      GUCG  AGcc    uuuua g
cucucuucu     a  c  -    AU        -UCCCC    --    uguu     u 

Annotation confidence High

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold132: 2432-2547 [+]

Mature bma-miR-1822-5p

• Accession: MIMAT0057240
• Description: Brugia malayi bma-miR-1822-5p mature miRNA
• Sequence: 24 - CGUCUUUCACCUGUUCAGCUAUCGG - 48
• Evidence: experimental ; Illumina [2]

Mature bma-miR-1822-3p

• Accession: MIMAT0031740
• Description: Brugia malayi bma-miR-1822-3p mature miRNA
• Sequence: 72 - GAGCUGCCCCUUGAAAGACUAA - 93
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498