Stem-loop bma-mir-250

Accession

MI0026292

Description

Brugia malayi bma-mir-250 precursor miRNA

Sequence

25919 reads, 1507.0 reads per million, 25 experiments

gaauauucauggcuaagcuugaACUGCCAGUGGUCUUGUGAUCCGuugagaaauuuuggaucgAAUCACAGCCAACUGGUGGCUCAgcuugcugugugcugcacuuuu
.......((((((.(((((.((.(((((((((((..((((((.((((.(((...))).)).)).))))))))).)))))))).)))))))))))))............

Structure

-----gaauauu      u     u  A        -   CU      C  -  g   a 
            cauggc aagcu ga CUGCCAGU GGU  UGUGAU CG uu aga  
            |||||| ||||| || |||||||| |||  |||||| || || ||| a
            gugucg uucgA CU GGUGGUCA CCG  ACACUA gc ag uuu  
uuuucacgucgu      -     -  C        A   --      A  u  g   u 

Annotation confidence High

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold435: 3185-3292 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from bma-mir-250

Mature bma-miR-250-5p

• Accession: MIMAT0057241
• Description: Brugia malayi bma-miR-250-5p mature miRNA
• Sequence: 23 - ACUGCCAGUGGUCUUGUGAUCCG - 45
• Evidence: not_experimental

Mature bma-miR-250-3p

• Accession: MIMAT0031743
• Description: Brugia malayi bma-miR-250-3p mature miRNA
• Sequence: 64 - AAUCACAGCCAACUGGUGGCUCA - 86
• Evidence: not_experimental

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4