miRBase entry: bma-mir-250

Stem-loop bma-mir-250

Accession

MI0026292

Description

Brugia malayi bma-mir-250 precursor miRNA

Sequence

gaauauucauggcuaagcuugaacugccaguggucuugugauccguugagaaauuuuggaucgAAUCACAGCCAACUGGUGGCUCAgcuugcugugugcugcacuuuu
.......((((((.(((((.((.(((((((((((..((((((.((((.(((...))).)).)).))))))))).)))))))).)))))))))))))............

Structure

-----gaauauu      u     u  a        -   cu      c  -  g   a 
            cauggc aagcu ga cugccagu ggu  ugugau cg uu aga  
            |||||| ||||| || |||||||| |||  |||||| || || ||| a
            gugucg uucgA CU GGUGGUCA CCG  ACACUA gc ag uuu  
uuuucacgucgu      -     -  C        A   --      A  u  g   u

Annotation confidence Not enough data

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Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold435: 3185-3292 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from bma-mir-250

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature bma-miR-250

Accession	MIMAT0031743
Description	Brugia malayi bma-miR-250 mature miRNA
Sequence	64 - AAUCACAGCCAACUGGUGGCUCA - 86
Evidence	not_experimental

References

PubMed ID: 22216965
Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
BMC Genomics (2012) 13:4