Stem-loop bma-mir-252

Accession

MI0026293

Description

Brugia malayi bma-mir-252 precursor miRNA

Literature search

5 open access papers mention bma-mir-252
(15 sentences)

Sequence

5228 reads, 462.0 reads per million, 23 experiments

acaauccucaaggauaagucauuCUAAGUAGUAGUGCCGCAGGUAAcaacaauugaguuuACCUGUUCUCUGCUACUUAACAugaccauccaugcuugaacacuu
.......(((((.((..(((((..((((((((((....((((((((..((......))))))))))...))))))))))..))))).....)).)))))......

Structure

acaaucc     g  ---aa     uC          UGCC        ca  aa 
       ucaag au     gucau  UAAGUAGUAG    GCAGGUAA  ac  u
       ||||| ||     |||||  ||||||||||    ||||||||  ||   
       aguuc ua     caguA  AUUCAUCGUC    UGUCCAuu  ug  u
-uucaca     g  ccuac     CA          -UCU        --  ag 

Annotation confidence High

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold3: 1319133-1319237 [+]

Mature bma-miR-252-5p

• Accession: MIMAT0031744
• Description: Brugia malayi bma-miR-252-5p mature miRNA
• Sequence: 24 - CUAAGUAGUAGUGCCGCAGGUAA - 46
• Evidence: experimental ; Illumina [2]

Mature bma-miR-252-3p

• Accession: MIMAT0057242
• Description: Brugia malayi bma-miR-252-3p mature miRNA
• Sequence: 61 - ACCUGUUCUCUGCUACUUAACA - 82
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498