Stem-loop bma-mir-283

Accession

MI0026297

Description

Brugia malayi bma-mir-283 precursor miRNA

Literature search

1 open access papers mention bma-mir-283
(1 sentences)

Sequence

33068 reads, 982.0 reads per million, 16 experiments

uucagaauugauuguccaaggcCAAUAUCAGCAGGUUUUGUCUGGcuaaauuuagguccAGACCUACCUGUCGAUAUUGCCcgcgggcagucacguaccuuau
........(((((((((..((.(((((((.((((((...((((((((.......)).))))))..)))))).))))))).))..)))))))))..........

Structure

--uucagaau         aa  c       A      UUU      -  aa 
          ugauugucc  gg CAAUAUC GCAGGU   GUCUGG cu  a
          |||||||||  || ||||||| ||||||   |||||| ||  u
          acugacggg  cC GUUAUAG UGUCCA   CAGAcc gg  u
uauuccaugc         cg  C       C      -UC      u  au 

Annotation confidence High

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold15: 750997-751099 [+]

Mature bma-miR-283-5p

• Accession: MIMAT0031746
• Description: Brugia malayi bma-miR-283-5p mature miRNA
• Sequence: 23 - CAAUAUCAGCAGGUUUUGUCUGG - 45
• Evidence: experimental ; Illumina [2]

Mature bma-miR-283-3p

• Accession: MIMAT0057243
• Description: Brugia malayi bma-miR-283-3p mature miRNA
• Sequence: 60 - AGACCUACCUGUCGAUAUUGCC - 81
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498