Stem-loop bma-mir-45

Accession

MI0026305

Description

Brugia malayi bma-mir-45 precursor miRNA

Literature search

1 open access papers mention bma-mir-45
(1 sentences)

Sequence

25100 reads, 2753.0 reads per million, 25 experiments

gaucguaaaacuaaguaccauuCUGGAUGUUUCUCUGAGUCAUAugucaaauuuauauaucuaCGACUAGAGGAACAUUCAGCAUugguuaugguuugcuuauauaca
....(((((.(((...((((.(((((((((((((((.((((((((((.......))))))....)))))))))))))))))).).))))..)))))))).........

Structure

-----gauc     a   agu    u -              G    ----      ca 
         guaaa cua   acca u CUGGAUGUUUCUCU AGUC    AUAugu  a
         ||||| |||   |||| | |||||||||||||| ||||    ||||||  a
         cguuu ggu   uggu A GACUUACAAGGAGA UCAG    uauaua  u
acauauauu     -   -au    U C              -    Cauc      uu 

Annotation confidence High

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold174: 59881-59988 [+]

Mature bma-miR-45-5p

• Accession: MIMAT0057247
• Description: Brugia malayi bma-miR-45-5p mature miRNA
• Sequence: 23 - CUGGAUGUUUCUCUGAGUCAUA - 44
• Evidence: experimental ; Illumina [2]

Mature bma-miR-45-3p

• Accession: MIMAT0031750
• Description: Brugia malayi bma-miR-45-3p mature miRNA
• Sequence: 64 - CGACUAGAGGAACAUUCAGCAU - 85
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498