Stem-loop bma-mir-49

Accession

MI0026306

Description

Brugia malayi bma-mir-49 precursor miRNA

Literature search

1 open access papers mention bma-mir-49
(1 sentences)

Sequence

12814 reads, 617.0 reads per million, 23 experiments

caucucaaaagccaggacggucAGUAGCUUCAUAUGUGUUCUUCGuugauaaguacacuuuguuguauugaaaaugauauucgAAGCACCAUGUGAAGCUGCUCUcugaccuuggaugaauuuccguag
.............(((.(((..((((((((((((((.((.(((((......((((((......))))))............))))).))))))))))))))))..))).))).(((......)))....

Structure

----caucucaaaagcc   a   uc              U  U     ------uugaua      cu 
                 agg cgg  AGUAGCUUCAUAUG GU CUUCG            aguaca  u
                 ||| |||  |||||||||||||| || |||||            ||||||   
                 ucc guc  UCGUCGAAGUGUAC CA GAAgc            uuaugu  u
gaugccuuuaaguaggu   a   UC              -  C     uuauaguaaaag      ug 

Annotation confidence High

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold56: 93835-93963 [+]

Mature bma-miR-49-5p

• Accession: MIMAT0057248
• Description: Brugia malayi bma-miR-49-5p mature miRNA
• Sequence: 23 - AGUAGCUUCAUAUGUGUUCUUCG - 45
• Evidence: experimental ; Illumina [2]

Mature bma-miR-49-3p

• Accession: MIMAT0031751
• Description: Brugia malayi bma-miR-49-3p mature miRNA
• Sequence: 84 - AAGCACCAUGUGAAGCUGCUCU - 105
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498