Stem-loop bma-mir-5361

Accession

MI0026308

Description

Brugia malayi bma-mir-5361 precursor miRNA

Sequence

7275 reads, 646.0 reads per million, 22 experiments

gcuuacgaaagcguauuaagcucUGGGAUAUCUCGGAAGGUUUCGgaaauauuuggcucgAAAACUUCCAUGAUAUCUUCGAuuuaauucacgcuauauucuuua
.........(((((((((((.((.((((((((..(((((..(((((...........)))))..)))))..)))))))).))))))))..)))))..........

Structure

-gcuuacgaa     --      c  U        UC     GU     aaau 
          agcgu  auuaag uc GGGAUAUC  GGAAG  UUCGg    a
          |||||  |||||| || ||||||||  |||||  |||||    u
          ucgca  uaauuu AG UUCUAUAG  CCUUC  AAgcu    u
auuucuuaua     cu      -  C        UA     AA     cggu 

Annotation confidence High

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold87: 58714-58818 [-]

Mature bma-miR-5361-5p

• Accession: MIMAT0031753
• Description: Brugia malayi bma-miR-5361-5p mature miRNA
• Sequence: 24 - UGGGAUAUCUCGGAAGGUUUCG - 45
• Evidence: experimental ; Illumina [2]

Mature bma-miR-5361-3p

• Accession: MIMAT0057250
• Description: Brugia malayi bma-miR-5361-3p mature miRNA
• Sequence: 61 - AAAACUUCCAUGAUAUCUUCGA - 82
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498