Stem-loop bma-mir-5364

Accession

MI0026310

Description

Brugia malayi bma-mir-5364 precursor miRNA

Literature search

3 open access papers mention bma-mir-5364
(7 sentences)

Sequence

110336 reads, 42405.0 reads per million, 26 experiments

uucuucuuuccauucuuuuccuuucaucgucaauuguagcacgguuaagcaauucAGCUAAUAAACACUACUUCUGCuugaugcguacaggugcCGAGGUAUUGUUUAUUGGCUGAgugcuauaccuccaguauucaucg
..........................................(((..((((.(((((((((((((((.((((((.(((((.......)))))...)))))).)))))))))))))))))))..)))..............

Structure

uucuucuuuccauucuuuuccuuucaucgucaauuguagcac   ua    a               C      --U     au 
                                          ggu  agca uucAGCUAAUAAACA UACUUC   GCuug  g
                                          |||  |||| ||||||||||||||| ||||||   |||||  c
                                          cca  ucgu gAGUCGGUUAUUUGU AUGGAG   uggac  g
----------------------------gcuacuuaugaccu   ua    -               U      Ccg     au 

Annotation confidence High

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold8: 610893-611032 [+]

Mature bma-miR-5364-5p

• Accession: MIMAT0057251
• Description: Brugia malayi bma-miR-5364-5p mature miRNA
• Sequence: 56 - AGCUAAUAAACACUACUUCUGC - 77
• Evidence: experimental ; Illumina [2]

Mature bma-miR-5364-3p

• Accession: MIMAT0031755
• Description: Brugia malayi bma-miR-5364-3p mature miRNA
• Sequence: 95 - CGAGGUAUUGUUUAUUGGCUGA - 116
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498