Stem-loop bma-mir-5366

Accession

MI0026313

Description

Brugia malayi bma-mir-5366 precursor miRNA

Sequence

uuauaaaauagccauaagcccgUAAAUGCACUAUGUUGCUAAUUaugugcguuuggaaaUUAGCAGCACGGCGCAUUUGCGcgcaaucuggcaaugccuauuaauac
..........((((...((.(((((((((.((.(((((((((((.............))))))))))).)).))))))))).))....))))...............

Structure

-----uuauaaaaua    -uaa  c         A  A           augug 
               gcca    gc cgUAAAUGC CU UGUUGCUAAUU     c
               ||||    || ||||||||| || |||||||||||     g
               cggu    cg GCGUUUACG GG ACGACGAUUaa     u
cauaauuauccguaa    cuaa  c         C  C           agguu 

Annotation confidence Low

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold1273: 2018-2124 [-]

Mature bma-miR-5366-3p

• Accession: MIMAT0031758
• Description: Brugia malayi bma-miR-5366-3p mature miRNA
• Sequence: 60 - UUAGCAGCACGGCGCAUUUGCG - 81
• Evidence: experimental ; Illumina [2]

Mature bma-miR-5366-5p

• Accession: MIMAT0037486
• Description: Brugia malayi bma-miR-5366-5p mature miRNA
• Sequence: 23 - UAAAUGCACUAUGUUGCUAAUU - 44
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498