Stem-loop bma-mir-84-1

Accession

MI0026316

Description

Brugia malayi bma-mir-84-1 precursor miRNA

Literature search

1 open access papers mention bma-mir-84-1
(3 sentences)

Sequence

uuuccaauugcaaugaggcugcUGAGGUAGUUUAUAAAGCUGCGAgagaaaaucaaacucGCAGAUUUUAAGCUAUCUCCACugccuuuauugcaugauucuuu
........(((((((((((.(..(((((((((((.(((.(((((((...........))))))).))))))))))))))..).))).)))))))).........

Structure

-uuuccaau        -   u cU           U   G       agaa 
         ugcaauga ggc g  GAGGUAGUUUA AAA CUGCGAg    a
         |||||||| ||| |  ||||||||||| ||| |||||||    a
         acguuauu ccg C  CUCUAUCGAAU UUU GACGcuc    u
uuucuuagu        u   u AC           -   A       aaac 

Annotation confidence Not enough data

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold7: 1916768-1916871 [-]

Mature bma-miR-84-5p

• Accession: MIMAT0031761
• Description: Brugia malayi bma-miR-84-5p mature miRNA
• Sequence: 23 - UGAGGUAGUUUAUAAAGCUGCGA - 45
• Evidence: experimental ; Illumina [2]

Mature bma-miR-84-3p

• Accession: MIMAT0031864
• Description: Brugia malayi bma-miR-84-3p mature miRNA
• Sequence: 61 - GCAGAUUUUAAGCUAUCUCCAC - 82
• Evidence: not_experimental

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498