Stem-loop bma-mir-84-2

Accession

MI0026317

Description

Brugia malayi bma-mir-84-2 precursor miRNA

Literature search

1 open access papers mention bma-mir-84-2
(3 sentences)

Sequence

875 reads, 63.0 reads per million, 16 experiments

uuuucaaauugcaagaggcugcUGAGGUAGUUUAUAAAGCUGcgagagcagaucauacucACAGAUUUUAAGCUAUCUCCACugccuuuauuguaugauucuuu
...(((...((((((((((.(..(((((((((((.(((.(((.(((...........))).))).))))))))))))))..).)))))..))))))))......

Structure

---uuu   aau     --     u cU           U   G   c   agca 
      uca   ugcaa  gaggc g  GAGGUAGUUUA AAA CUG gag    g
      |||   |||||  ||||| |  ||||||||||| ||| ||| |||    a
      agu   auguu  uuccg C  CUCUAUCGAAU UUU GAC cuc    u
uuucuu   ---     au     u AC           -   A   A   auac 

Annotation confidence High

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold192: 9573-9676 [+]

Mature bma-miR-84-5p

• Accession: MIMAT0031761
• Description: Brugia malayi bma-miR-84-5p mature miRNA
• Sequence: 23 - UGAGGUAGUUUAUAAAGCUG - 42
• Evidence: experimental ; Illumina [2]

Mature bma-miR-84-2-3p

• Accession: MIMAT0057253
• Description: Brugia malayi bma-miR-84-2-3p mature miRNA
• Sequence: 61 - ACAGAUUUUAAGCUAUCUCCAC - 82
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498