Stem-loop hbv-mir-B3RC

Accession

MI0026320

Description

Herpes B virus hbv-mir-B3RC precursor miRNA

Sequence

ccauccaccCAAUAAACCACGAACAGCCGUucauauuuuggucuCGGCUCUGCGUUUAUUGUUGGAaucugc
...((((..((((((((((.((...((((.(((.....)))...)))))))).)))))))).))))......

Structure

---cca    cc        -  C  ACA    --U   u 
      ucca  CAAUAAAC CA GA   GCCG   uca a
      ||||  |||||||| || ||   ||||   ||| u
      AGGU  GUUAUUUG GU CU   CGGC   ggu u
cgucua    -U        C  -  ---    ucu   u 

Annotation confidence Not enough data

Genome context

NC_004812: 97754-97825 [-]

Mature hbv-miR-B3RC-5p

• Accession: MIMAT0031764
• Description: Herpes B virus hbv-miR-B3RC-5p mature miRNA
• Sequence: 10 - CAAUAAACCACGAACAGCCGU - 30
• Evidence: experimental ; Illumina [1]

Mature hbv-miR-B3RC-3p

• Accession: MIMAT0031765
• Description: Herpes B virus hbv-miR-B3RC-3p mature miRNA
• Sequence: 45 - CGGCUCUGCGUUUAUUGUUGGA - 66
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21543500
   Identification and expression analysis of herpes B virus-encoded small RNAs
   "Amen MA, Griffiths A"
   "J Virol (2011) 85:7296-7311