Stem-loop cpa-MIR8140

Accession

MI0026389

Description

Carica papaya cpa-MIR8140 precursor miRNA

Sequence

CUUUUCAAGACUUCAGCUUCAaaugcaucaaugacaauuuucucucuuuacaaauagacugauuuugaguacagaaaauucagucuuuaaguuggugggaacaauugcccuugaugcaauugaagcugaagucuugaaagaga
.(((((((((((((((((((((.((((((((.(.((((((((((.((..((....((((((((((((....)))))...)))))))....)).)).))))).))))).).)))))))).)))))))))))))))))))))...

Structure

--C                     a        u a     -     u  uu  aaau       ---     a 
   UUUUCAAGACUUCAGCUUCAa ugcaucaa g caauu uucuc cu  ac    agacuga   uuuug g
   ||||||||||||||||||||| |||||||| | ||||| ||||| ||  ||    |||||||   |||||  
   gaaaguucugaagucgaaguu acguaguu c guuaa aaggg gg  ug    ucugacu   aagac u
aga                     a        c c     c     u  -u  aauu       uaa     a 

Annotation confidence Not enough data

Genome context

Unknown

Mature cpa-miR8140

• Accession: MIMAT0031837
• Description: Carica papaya cpa-miR8140 mature miRNA
• Sequence: 1 - CUUUUCAAGACUUCAGCUUCA - 21
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23216749
   Asymmetric purine-pyrimidine distribution in cellular small RNA population of papaya
   Aryal R, Yang X, Yu Q, Sunkar R, Li L, Ming R
   BMC Genomics (2012) 13:682