Stem-loop cel-mir-8199

Accession

MI0026830

Description

Caenorhabditis elegans cel-mir-8199 precursor miRNA

Sequence

5546 reads, 22.0 reads per million, 63 experiments

UCGGACAAUAUCACUGGAUCuucaaauauguggauuucaacguggcggaaauguauuagaaaaagguguAGAAGGAUGUUGGAAAAUA
.....(((((((.(((.(((((.......(((.(((((..(...)..))))).)))......))))).)))...))))))).......

Structure

--UCGGA       --A   G     caaauau   g     aa g 
       CAAUAUC   CUG AUCuu       gug auuuc  c  
       |||||||   ||| |||||       ||| |||||  | u
       GUUGUAG   GAu uggaa       uau uaaag  g  
AUAAAAG       GAA   g     -aaagau   g     gc g 

Annotation confidence Medium

Genome context

chrII: 2136822-2136909 [-]

Mature cel-miR-8199-5p

• Accession: MIMAT0032811
• Description: Caenorhabditis elegans cel-miR-8199-5p mature miRNA
• Sequence: 1 - UCGGACAAUAUCACUGGAUC - 20
• Evidence: experimental ; Illumina [1]

Mature cel-miR-8199-3p

• Accession: MIMAT0032812
• Description: Caenorhabditis elegans cel-miR-8199-3p mature miRNA
• Sequence: 70 - AGAAGGAUGUUGGAAAAUA - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260