miRBase entry: cel-mir-8203

Stem-loop cel-mir-8203


Accession
MI0026834
Description
Caenorhabditis elegans cel-mir-8203 precursor miRNA


Sequence

22859 reads, 3 reads per million, 13 experiments
UGAACAUCAUUCAGGGCAUUACaauuuugucuuuuugUAAAUACCCCAACUGAUAUUCGAU
((((.((((....(((..((((((..........))))))...)))....)))).))))..

Structure
--    C    UUCA   -CA      uuuu 
  UGAA AUCA    GGG   UUACaa    g
  |||| ||||    |||   ||||||     
  GCUU UAGU    CCC   AAUguu    u
UA    A    CAAC   AUA      uuuc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chrX: 7882764-7882824 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from cel-mir-8203
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cel-miR-8203-5p

Accession MIMAT0032819
Description Caenorhabditis elegans cel-miR-8203-5p mature miRNA
Sequence 1 - UGAACAUCAUUCAGGGCAUUAC - 22
Evidence experimental
Illumina [1]

Mature cel-miR-8203-3p

Accession MIMAT0032820
Description Caenorhabditis elegans cel-miR-8203-3p mature miRNA
Sequence 38 - UAAAUACCCCAACUGAUAUUCGAU - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260