Stem-loop ppc-mir-63k

Accession

MI0026937

Description

Pristionchus pacificus ppc-mir-63k precursor miRNA

Sequence

CCGCUCACUUGUAGCGUCAUGGCccaucaauuggucuggugcUAUGACAUAAAAGUGAGCGAAG
.(((((((((.((..(((((((((((..........))).)))))))).)).)))))))))...

Structure

--C         G  GC        -   ucaa 
   CGCUCACUU UA  GUCAUGGC cca    u
   ||||||||| ||  |||||||| |||     
   GCGAGUGAA AU  CAGUAUcg ggu    u
GAA         A  -A        u   cugg 

Annotation confidence Low

Genome context

ABKE03000028.1: 915983-916046 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from ppc-mir-63k

Mature ppc-miR-63k-5p

• Accession: MIMAT0033018
• Description: Pristionchus pacificus ppc-miR-63k-5p mature miRNA
• Sequence: 1 - CCGCUCACUUGUAGCGUCAUGGC - 23
• Evidence: experimental ; Illumina [1]

Mature ppc-miR-63k-3p

• Accession: MIMAT0033019
• Description: Pristionchus pacificus ppc-miR-63k-3p mature miRNA
• Sequence: 43 - UAUGACAUAAAAGUGAGCGAAG - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260