Stem-loop str-mir-7880d

Accession

MI0027091

Description

Strongyloides ratti str-mir-7880d precursor miRNA

Sequence

GAUUGGGUCAGGCAGCAAAUAuacuuuuuuaagaauguuuaUUUGCGACUGUAUCCACAUCACU
(((((((((((...(((((((.((.(((....))).)).)))))))..))).))))).)))...

Structure

---   -     -   GCA       u  u   u 
   GAU UGGGU CAG   GCAAAUA ac uuu u
   ||| ||||| |||   ||||||| || |||  
   CUA ACCUA GUC   CGUUUau ug aag a
UCA   C     U   -AG       u  u   a 

Annotation confidence Not enough data

Genome context

Sratti_scf00001_Chr01: 398001-398064 [-]

Clustered miRNAs

20 other miRNAs are < 10 kb from str-mir-7880d

Mature str-miR-7880d-5p

• Accession: MIMAT0033315
• Description: Strongyloides ratti str-miR-7880d-5p mature miRNA
• Sequence: 1 - GAUUGGGUCAGGCAGCAAAUA - 21
• Evidence: experimental ; Illumina [1]

Mature str-miR-7880d-3p

• Accession: MIMAT0033316
• Description: Strongyloides ratti str-miR-7880d-3p mature miRNA
• Sequence: 42 - UUUGCGACUGUAUCCACAUCACU - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260