Stem-loop str-mir-71

Accession

MI0027092

Description

Strongyloides ratti str-mir-71 precursor miRNA

Sequence

UGAAAGACAUGGGUAGUGAGACGaugaguuugaauuccgUAUCACUAUUCUGUUUUUCUCC
.((((((((.(((((((((.(((..((((....))))))).)))))))))))))))))...

Structure

--U        U         G   au    u 
   GAAAGACA GGGUAGUGA ACG  gagu u
   |||||||| ||||||||| |||  ||||  
   CUUUUUGU CUUAUCACU Ugc  cuua g
CCU        -         A   --    a 

Annotation confidence Low

Genome context

Sratti_scf00001_Chr02: 4788588-4788648 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from str-mir-71

Mature str-miR-71-5p

• Accession: MIMAT0033317
• Description: Strongyloides ratti str-miR-71-5p mature miRNA
• Sequence: 1 - UGAAAGACAUGGGUAGUGAGACG - 23
• Evidence: experimental ; Illumina [1]

Mature str-miR-71-3p

• Accession: MIMAT0033318
• Description: Strongyloides ratti str-miR-71-3p mature miRNA
• Sequence: 40 - UAUCACUAUUCUGUUUUUCUCC - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260