Stem-loop str-mir-5359

Accession

MI0027110

Description

Strongyloides ratti str-mir-5359 precursor miRNA

Sequence

246085 reads, 5177.0 reads per million, 12 experiments

UCUGGGAUUGUUUAUCUUGGUAUccaugagaugauacAAGAAUAAACAUUCCUUGAC
((.((((.(((((((((((.((((........)))))))).))))))).)))).)).

Structure

-  U    U       -    G    cau 
 UC GGGA UGUUUAU CUUG UAUc   g
 || |||| ||||||| |||| ||||    
 AG UCCU ACAAAUA GAAc auag   a
C  U    U       A    -    uag 

Annotation confidence High

Genome context

Sratti_scf00001_ChrX: 1910078-1910134 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from str-mir-5359

Mature str-miR-5359-5p

• Accession: MIMAT0033352
• Description: Strongyloides ratti str-miR-5359-5p mature miRNA
• Sequence: 1 - UCUGGGAUUGUUUAUCUUGGUAU - 23
• Evidence: experimental ; Illumina [1]

Mature str-miR-5359-3p

• Accession: MIMAT0033353
• Description: Strongyloides ratti str-miR-5359-3p mature miRNA
• Sequence: 38 - AAGAAUAAACAUUCCUUGAC - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260