Stem-loop str-mir-40

Accession

MI0027152

Description

Strongyloides ratti str-mir-40 precursor miRNA

Sequence

AGAGUUUGUCGGCAUGGUGACUuauaauuguuuaaguaauUCACCGGGUGUACGAAUUCUCA
(((((((((..((.((((((((((........))))....)))))).))..)))))))))..

Structure

--         CG  A      ----    uaa 
  AGAGUUUGU  GC UGGUGA    CUua   u
  |||||||||  || ||||||    ||||    
  UCUUAAGCA  UG GCCACU    gaau   u
AC         UG  G      uaau    uug 

Annotation confidence Low

Genome context

Sratti_scf00001_Chr02: 3570098-3570159 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from str-mir-40

Mature str-miR-40-5p

• Accession: MIMAT0033436
• Description: Strongyloides ratti str-miR-40-5p mature miRNA
• Sequence: 1 - AGAGUUUGUCGGCAUGGUGACU - 22
• Evidence: experimental ; Illumina [1]

Mature str-miR-40-3p

• Accession: MIMAT0033437
• Description: Strongyloides ratti str-miR-40-3p mature miRNA
• Sequence: 41 - UCACCGGGUGUACGAAUUCUCA - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260