Stem-loop str-mir-279

Accession

MI0027169

Description

Strongyloides ratti str-mir-279 precursor miRNA

Sequence

CAAGGUAAUUUCAUAGUCAUGguuuauugacaggcgcaUGACUAGAACAUUACUUUG
((((((((((((.((((((((((((......)))).))))))))))).)))))))))

Structure

         -   A        -    au 
CAAGGUAAU UUC UAGUCAUG guuu  u
||||||||| ||| |||||||| ||||   
GUUUCAUUA AAG AUCAGUac cgga  g
         C   -        g    ca 

Annotation confidence Low

Genome context

Sratti_scf00002_Chr01: 94707-94763 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from str-mir-279

Mature str-miR-279-5p

• Accession: MIMAT0033470
• Description: Strongyloides ratti str-miR-279-5p mature miRNA
• Sequence: 1 - CAAGGUAAUUUCAUAGUCAUG - 21
• Evidence: experimental ; Illumina [1]

Mature str-miR-279-3p

• Accession: MIMAT0033471
• Description: Strongyloides ratti str-miR-279-3p mature miRNA
• Sequence: 39 - UGACUAGAACAUUACUUUG - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260