Stem-loop pxy-mir-8530

Accession

MI0027368

Description

Plutella xylostella pxy-mir-8530 precursor miRNA

Literature search

1 open access papers mention pxy-mir-8530
(1 sentences)

Sequence

34 reads, 1498 reads per million, 4 experiments

gcuggcgggcggugcggACAGAUCGUGAUGGCCUUAGAcuuucguagaucUAAGGUCAUCACGUUUUGUCCcuaccguccagccgaa
..((((((((((((.(((((((.(((((((((((((((((.....)).))))))))))))))).))))))).)))))))).))))..

Structure

gc    -        c       U               -  u 
  uggc gggcggug ggACAGA CGUGAUGGCCUUAGA cu u
  |||| |||||||| ||||||| ||||||||||||||| || c
  gccg ccugccau CCUGUUU GCACUACUGGAAUcu ga g
aa    a        c       U               a  u 

Annotation confidence Not enough data

Genome context

scaffold_98: 774474-774560 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pxy-mir-8530

Mature pxy-miR-8530-5p

• Accession: MIMAT0033772
• Description: Plutella xylostella pxy-miR-8530-5p mature miRNA
• Sequence: 18 - ACAGAUCGUGAUGGCCUUAGA - 38
• Evidence: experimental ; Illumina [1]

Mature pxy-miR-8530-3p

• Accession: MIMAT0033773
• Description: Plutella xylostella pxy-miR-8530-3p mature miRNA
• Sequence: 51 - UAAGGUCAUCACGUUUUGUCC - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24236051
   Identification and developmental profiling of microRNAs in diamondback moth, Plutellaxylostella (L.)
   Liang P, Feng B, Zhou X, Gao X
   PLoS One (2013) 8:e78787