Stem-loop pra-MIR8788b

Accession

MI0027867

Description

Phytophthora ramorum pra-MIR8788b precursor miRNA

Sequence

gcgagaguucgcuucgcCUACCAAGCGUACCAACGCCGcauuguagcaaacgaggaguccaagguggcgcagccucucgggccucucauuugcugcgcugcaGCGCUGGUUCGCUUGGUACGCcgagcgcacucuugc
((((((((.(((((.((.(((((((((.((((.(((.(((.(((((((((.((((.((((.(((.(((...)))))).)))).)))).))))))))).))).))).)))).))))))))).)).))))).))))))))

Structure

        u     c  C         U    A   C   u         c    a    a   u   g 
gcgagagu cgcuu gc UACCAAGCG ACCA CGC Gca uguagcaaa gagg gucc agg ggc  
|||||||| ||||| || ||||||||| |||| ||| ||| ||||||||| |||| |||| ||| ||| c
cguucuca gcgag CG AUGGUUCGC UGGU GCG cgu gcgucguuu cucu cggg ucu ccg  
        c     c  C         U    C   a   c         a    c    c   -   a 

Annotation confidence Not enough data

Genome context

Unknown

Mature pra-miR8788b-5p

• Accession: MIMAT0034276
• Description: Phytophthora ramorum pra-miR8788b-5p mature miRNA
• Sequence: 18 - CUACCAAGCGUACCAACGCCG - 38
• Evidence: experimental ; 454 [1]

Mature pra-miR8788b-3p

• Accession: MIMAT0034277
• Description: Phytophthora ramorum pra-miR8788b-3p mature miRNA
• Sequence: 103 - GCGCUGGUUCGCUUGGUACGC - 123
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 24204767
   Phytophthora have distinct endogenous small RNA populations that include short interfering and microRNAs
   Fahlgren N, Bollmann SR, Kasschau KD, Cuperus JT, Press CM, Sullivan CM, Chapman EJ, Hoyer JS, Gilbert KB, Grünwald NJ, Carrington JC
   PLoS One (2013) 8:e77181