Stem-loop sly-MIR319b

Accession

MI0029098

Description

Solanum lycopersicum sly-MIR319b precursor miRNA

Literature search

22 open access papers mention sly-MIR319b
(162 sentences)

Sequence

2383188 reads, 80808.0 reads per million, 82 experiments

guccccuuuuuuaagauucuaauuuugugauuuagauguaauguggaagaugguauaagAGAGCUUCCUUUAGUCCACUCAuagguagacgaaggauuugaauuaucucccgacucauucauucaaacgcaauaggaaguauguaaucuuauacuauugugaaugugugaaugaugcgggagauaaauucucuccuuuuuaucugugcUUGGACUGAAGGGAGCUCCCUuuuaccuucuuucuucgguuucuuuuagucgaauugguuucuuaugaauuaguuguuuggggc
(((((..(((.(((((..(((((((...((((.(((........((((((.((((.(((.(((((((((((((((((..((((((((((..(((((...(((((((((((((..((((((((.((..((((((((.(((........)))...))))))))..)).))))))))..)))))))).)))))..)))))))))))))))..))))))))))))))))).))).)))).)))))).......)))...)))))))))))..))))).)))..........)))))

Structure

     --------cu   u     uu       ugu    --u   uguaaugu      u    u   A                 CU          cg     uuu     -        ac        u  aa        --g   uau 
guccc          uuu uaaga  cuaauuu   gauu   aga        ggaaga ggua aag GAGCUUCCUUUAGUCCA  CAuagguaga  aagga   gaauu aucucccg  ucauucau ca  cgcaauag   aag   g
|||||          ||| |||||  |||||||   ||||   |||        |||||| |||| ||| |||||||||||||||||  ||||||||||  |||||   ||||| ||||||||  |||||||| ||  ||||||||   |||    
cgggg          aag auucu  gguuaag   cuga   ucu        cuuucu ccau uUC CUCGAGGGAAGUCAGGU  gugucuauuu  uuccu   cuuaa uagagggc  aguaagug gu  guguuauc   uuc   u
     uuuguugauu   u     uu       ---    uuu   -uuggcuu      u    u   C                 Uc          --     -cu     a        gu        u  aa        aua   uaa 

Annotation confidence High

Genome context

chr6: 1551676-1551967 [+]

Mature sly-miR319b-5p

• Accession: MIMAT0055739
• Description: Solanum lycopersicum sly-miR319b-5p mature miRNA
• Sequence: 60 - AGAGCUUCCUUUAGUCCACUCA - 81
• Evidence: experimental ; unknown

Mature sly-miR319b-3p

• Accession: MIMAT0035430
• Description: Solanum lycopersicum sly-miR319b-3p mature miRNA
• Sequence: 209 - UUGGACUGAAGGGAGCUCCCU - 229
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24376253
   Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant
   Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T
   J Exp Bot (2014) 65:725-739