miRBase entry: sly-MIR156e

Stem-loop sly-MIR156e


Accession
MI0029110
Description
Solanum lycopersicum sly-MIR156e precursor miRNA
Gene family
MIPF0000008; MIR156

Literature search
32 open access papers mention sly-MIR156e
(168 sentences)

Sequence

ugguggUGAUAGAAGAGAGUGAGCACacaugguguuuucuugcaugauguuuauauauauauaugcuugaaacuauguguGCUUACUCUCUAUCUGUCACCccca
(((.(((((((((((((((((((((((((((((...(((..(((((((((......)))).)))))..))))))))))))))))))))))).))))))))).)))

Structure
   u         -                    guu   uu     -    uu 
ugg ggUGAUAGA AGAGAGUGAGCACacauggu   uuc  gcaug augu  a
||| ||||||||| ||||||||||||||||||||   |||  ||||| ||||   
acc CCACUGUCU UCUCUCAUUCGuguguauca   aag  cguau uaua  u
   c         A                    ---   uu     a    ua 


Annotation confidence Not enough data
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Genome context
chr8: 51945235-51945339 [-]

Database links

Mature sly-miR156e-5p

Accession MIMAT0035453
Description Solanum lycopersicum sly-miR156e-5p mature miRNA
Sequence 7 - UGAUAGAAGAGAGUGAGCAC - 26
Evidence experimental
Illumina [1]

Mature sly-miR156e-3p

Accession MIMAT0035454
Description Solanum lycopersicum sly-miR156e-3p mature miRNA
Sequence 81 - GCUUACUCUCUAUCUGUCACC - 101
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24376253
    Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant
    Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T
    J Exp Bot (2014) 65:725-739