Stem-loop sly-MIR9476

Accession

MI0029118

Description

Solanum lycopersicum sly-MIR9476 precursor miRNA

Literature search

1 open access papers mention sly-MIR9476
(2 sentences)

Sequence

ccuguccaaaacugcuauuggUCUAGUCCUGCAUCUUUUUUUacauuuuuuccguuaucaaaaaauauaaAAAAAGAUGCAGGACUAGACCaauagcaggauggauugg
((.(((((...((((((((((((((((((((((((((((((((.(((((((........))))))).))))))))))))))))))))))))))))))))..))))).))

Structure

  u     aaa                                c       ccg 
cc gucca   cugcuauuggUCUAGUCCUGCAUCUUUUUUUa auuuuuu   u
|| |||||   |||||||||||||||||||||||||||||||| |||||||    
gg uaggu   gacgauaaCCAGAUCAGGACGUAGAAAAAaau uaaaaaa   u
  u     -ag                                a       cua 

Annotation confidence Not enough data

Genome context

chr1: 88110498-88110606 [-]

Mature sly-miR9476-5p

• Accession: MIMAT0035469
• Description: Solanum lycopersicum sly-miR9476-5p mature miRNA
• Sequence: 22 - UCUAGUCCUGCAUCUUUUUUU - 42
• Evidence: experimental ; Illumina [1]

Mature sly-miR9476-3p

• Accession: MIMAT0035470
• Description: Solanum lycopersicum sly-miR9476-3p mature miRNA
• Sequence: 71 - AAAAAGAUGCAGGACUAGACC - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24376253
   Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant
   Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T
   J Exp Bot (2014) 65:725-739