Stem-loop sly-MIR171e

Accession

MI0029125

Description

Solanum lycopersicum sly-MIR171e precursor miRNA

Literature search

24 open access papers mention sly-MIR171e
(127 sentences)

Sequence

136216 reads, 3447.0 reads per million, 80 experiments

uaggaagauauauauAGAUAUUGAUGCGGUUCAAUCugaaagacaugguuagauauguaauuagccuuguaauuuuggaUUGAGCCGCGUCAAUAUCUCUcuuccua
((((((((.......((((((((((((((((((((((((((.(((.((((((........)))))).)))..)))))))))))))))))))))))))).))))))))

Structure

        uauauau                          -g   u      aua 
uaggaaga       AGAUAUUGAUGCGGUUCAAUCugaaa  aca gguuag   u
||||||||       ||||||||||||||||||||||||||  ||| ||||||    
auccuucU       UCUAUAACUGCGCCGAGUUagguuuu  ugu ccgauu   g
        ------C                          aa   u      aau 

Annotation confidence High

Genome context

chr7: 60765650-60765756 [+]

Mature sly-miR171e-5p

• Accession: MIMAT0055741
• Description: Solanum lycopersicum sly-miR171e-5p mature miRNA
• Sequence: 16 - AGAUAUUGAUGCGGUUCAAUC - 36
• Evidence: experimental ; unknown

Mature sly-miR171e-3p

• Accession: MIMAT0035482
• Description: Solanum lycopersicum sly-miR171e-3p mature miRNA
• Sequence: 80 - UUGAGCCGCGUCAAUAUCUCU - 100
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24376253
   Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant
   Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T
   J Exp Bot (2014) 65:725-739