Stem-loop bma-mir-36d

Accession

MI0029192

Description

Brugia malayi bma-mir-36d precursor miRNA

Literature search

1 open access papers mention bma-mir-36d
(8 sentences)

Sequence

uuucuacaaaacuuuauuuaugAGGAAUAGUCUCCCUGGAUAGAgcuuuaaaauaauuaauuguUCACCAGAGAAAUUAUUCCACAcaaauacaguaccauuccuaauc
..........(((.(((((.((.((((((((.((.((((...((((.((((.....))))..)))).)))).)).)))))))).)).))))).))).............

Structure

---uuucuacaaa   u     a  A        C  C    AUA    -u    a 
             acu uauuu ug GGAAUAGU UC CUGG   GAgc  uuaa a
             ||| ||||| || |||||||| || ||||   ||||  |||| u
             uga auaaa AC CCUUAUUA AG GACC   CUug  aauu a
cuaauccuuacca   c     c  A        A  A    --A    uu    a 

Annotation confidence Low

Genome context

Bmal_v3_scaffold153: 16078-16186 [+]

Clustered miRNAs

9 other miRNAs are < 10 kb from bma-mir-36d

Mature bma-miR-36d-5p

• Accession: MIMAT0037492
• Description: Brugia malayi bma-miR-36d-5p mature miRNA
• Sequence: 23 - AGGAAUAGUCUCCCUGGAUAGA - 44
• Evidence: experimental ; Illumina [1]

Mature bma-miR-36d-3p

• Accession: MIMAT0037493
• Description: Brugia malayi bma-miR-36d-3p mature miRNA
• Sequence: 65 - UCACCAGAGAAAUUAUUCCACA - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498