Stem-loop dvi-mir-989

Accession

MI0029269

Description

Drosophila virilis dvi-mir-989 precursor miRNA

Sequence

gagaaaaacgauucgggaauuGGCCACUACCUCGCAGUCACGugauccacaaacgcagccggcucuggugcuugggaaaaauacaauuuucuuuuguuuuccugggcgccgcaacguuuugcguucauuucauauuucaUGUGAUGUGACGUAGUGGAACauuccugacguuugcagccacagcgcg
.....(((((..((((((((...(((((((.(((((.((((((((......(((((((.((....((((((((((((((...((((.......))))))))))))))))))...))..)))))))...........))))))))))))).)))))))...)))))))))))))((.((....)))).

Structure

---------gagaa     au        uGG       C     G        -----uccaca       -c  gcuc              aau    uu 
              aaacg  ucgggaau   CCACUAC UCGCA UCACGuga           aacgcag  cg    uggugcuugggaaa   acaa  u
              |||||  ||||||||   ||||||| ||||| ||||||||           |||||||  ||    ||||||||||||||   ||||  u
              uuugc  aguccuua   GGUGAUG AGUGU AGUGUacu           uugcguu  gc    gccgcggguccuuu   uguu  c
gcgcgacaccgacg     --        CAA       C     -        uuauacuuuac       uu  -aac              ---    uu 

Annotation confidence Not enough data

Genome context

scaffold_12875: 1889279-1889465 [+]

Mature dvi-miR-989-5p

• Accession: MIMAT0035602
• Description: Drosophila virilis dvi-miR-989-5p mature miRNA
• Sequence: 22 - GGCCACUACCUCGCAGUCACG - 42
• Evidence: experimental ; Illumina [1]

Mature dvi-miR-989-3p

• Accession: MIMAT0035603
• Description: Drosophila virilis dvi-miR-989-3p mature miRNA
• Sequence: 140 - UGUGAUGUGACGUAGUGGAAC - 160
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24448446
   Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "RNA (2014) 20:360-372