Stem-loop hco-mir-9551

Accession

MI0029295

Description

Haemonchus contortus hco-mir-9551 precursor miRNA

Literature search

1 open access papers mention hco-mir-9551
(1 sentences)

Sequence

216412 reads, 2418.0 reads per million, 21 experiments

uguguuugugugaauauuagcauggCUUAGUAGAUGCUGUUGCUAUCUaguaaauaggaUAUCACAGCAUUUUACUGAGCCcugcuaaaacgggacaaa
....(((((.(.....((((((.(((((((((((((((((.(.(((((........))))).))))))).))))))))))).))))))....).)))))

Structure

ugug     g gaaua      u           -      U C     agu 
    uuugu u     uuagca ggCUUAGUAGA UGCUGU G UAUCU   a
    ||||| |     |||||| ||||||||||| |||||| | |||||    
    aaaca g     aaucgu CCGAGUCAUUU ACGACA C AUagg   a
----     g -gcaa      c           U      - U     aua 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-9551-5p

• Accession: MIMAT0058017
• Description: Haemonchus contortus hco-miR-9551-5p mature miRNA
• Sequence: 26 - CUUAGUAGAUGCUGUUGCUAUCU - 48
• Evidence: experimental ; Illumina [1]

Mature hco-miR-9551-3p

• Accession: MIMAT0035652
• Description: Haemonchus contortus hco-miR-9551-3p mature miRNA
• Sequence: 60 - UAUCACAGCAUUUUACUGAGCC - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4