miRBase entry: aca-let-7c-3

Stem-loop aca-let-7c-3

Accession

MI0029346

Description

Anolis carolinensis aca-let-7c-3 precursor miRNA

Literature search

1 open access papers mention aca-let-7c-3
(1 sentences)

Sequence

gcauccagguUGAGGUAGUAGGUUGUAUGGUUuagaauuacaccaagggagauaaCUGUACAACCUCCUAGCUUUCCuugggucuugcaca
(((((((((..(((.(((.(((((((((((((.....................))))))))))))).))).)))..))))))...)))...

Structure

---   ---      uU   G   U             uagaauuac 
   gca   uccagg  GAG UAG AGGUUGUAUGGUU         a
   |||   ||||||  ||| ||| |||||||||||||         c
   cgu   ggguuC  UUC AUC UCCAACAUGUCaa         c
aca   ucu      CU   G   C             uagagggaa

Annotation confidence Not enough data

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Genome context

CM000943.1: 2619225-2619315 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from aca-let-7c-3

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature aca-let-7c-5p

Accession	MIMAT0021696
Description	Anolis carolinensis aca-let-7c-5p mature miRNA
Sequence	11 - UGAGGUAGUAGGUUGUAUGGUU - 32
Evidence	experimental Illumina [1]

Mature aca-let-7c-3-3p

Accession	MIMAT0037557
Description	Anolis carolinensis aca-let-7c-3-3p mature miRNA
Sequence	56 - CUGUACAACCUCCUAGCUUUCC - 77
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196