Stem-loop aca-mir-133b

Accession

MI0029354

Description

Anolis carolinensis aca-mir-133b precursor miRNA

Literature search

2 open access papers mention aca-mir-133b
(8 sentences)

Sequence

145 reads, 50.0 reads per million, 2 experiments

acuugaguccugcucugGCUGGUCAAAGGGAACCACGGCUgucuuccuugaaggUUUGGUCCCCUUUAACCAGCUacagcaguccugauauca
...(.((..(((((.((((((((.((((((.((((.((((.((......)).)))))))).)))))).)))))))).)))))..)).).....

Structure

--acu g  uc     c        C      A    C    g  uu 
     u ag  cugcu ugGCUGGU AAAGGG ACCA GGCU uc  c
     | ||  ||||| |||||||| |||||| |||| |||| ||   
     a uc  gacga aUCGACCA UUUCCC UGGU UUgg ag  c
acuau g  cu     c        A      C    -    a  uu 

Annotation confidence High

Genome context

chr1: 122859594-122859686 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from aca-mir-133b

Mature aca-miR-133b-5p

• Accession: MIMAT0037567
• Description: Anolis carolinensis aca-miR-133b-5p mature miRNA
• Sequence: 18 - GCUGGUCAAAGGGAACCACGGCU - 40
• Evidence: experimental ; Illumina [1]

Mature aca-miR-133b-3p

• Accession: MIMAT0037568
• Description: Anolis carolinensis aca-miR-133b-3p mature miRNA
• Sequence: 55 - UUUGGUCCCCUUUAACCAGCU - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196