miRBase entry: aca-mir-133b

Stem-loop aca-mir-133b

Accession

MI0029354

Description

Anolis carolinensis aca-mir-133b precursor miRNA

Literature search

2 open access papers mention aca-mir-133b
(8 sentences)

Sequence

acuugaguccugcucugGCUGGUCAAAGGGAACCACGGCugucuuccuugaaggUUUGGUCCCCUUUAACCAGCUAcagcaguccugauauca
...(.((..(((((.((((((((.((((((.((((.((((.((......)).)))))))).)))))).)))))))).)))))..)).).....

Structure

--acu g  uc     c        C      A    C    g  uu 
     u ag  cugcu ugGCUGGU AAAGGG ACCA GGCu uc  c
     | ||  ||||| |||||||| |||||| |||| |||| ||   
     a uc  gacga AUCGACCA UUUCCC UGGU UUgg ag  c
acuau g  cu     c        A      C    -    a  uu

Annotation confidence Not enough data

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Genome context

chr1: 122859594-122859686 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from aca-mir-133b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature aca-miR-133b-5p

Accession	MIMAT0037567
Description	Anolis carolinensis aca-miR-133b-5p mature miRNA
Sequence	18 - GCUGGUCAAAGGGAACCACGGC - 39
Evidence	experimental Illumina [1]

Mature aca-miR-133b-3p

Accession	MIMAT0037568
Description	Anolis carolinensis aca-miR-133b-3p mature miRNA
Sequence	55 - UUUGGUCCCCUUUAACCAGCUA - 76
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196