miRBase entry: cpi-mir-16c

Stem-loop cpi-mir-16c

Accession

MI0029401

Description

Chrysemys picta cpi-mir-16c precursor miRNA

Sequence

ucagcagugcucUAGCAGCACGUAAAUACUGGAGUuuaggauugccuagcugcUCUCCAGUAUUGCAUUGCUGCUuuaguguggcugg
.((((..((((..(((((((....((((((((((.(((((....))))).....))))))))))....)))))))..))))..)))).

Structure

u    ag    cU       CGUA          ----U     a 
 cagc  ugcu  AGCAGCA    AAUACUGGAG     uuagg u
 ||||  ||||  |||||||    ||||||||||     |||||  
 gucg  guga  UCGUCGU    UUAUGACCUC     gaucc u
g    gu    uu       UACG          Ucguc     g

Annotation confidence Not enough data

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Genome context

KK088187.1: 4724903-4724990 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-16c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-16c-5p

Accession	MIMAT0037636
Description	Chrysemys picta cpi-miR-16c-5p mature miRNA
Sequence	13 - UAGCAGCACGUAAAUACUGGAGU - 35
Evidence	experimental Illumina [1]

Mature cpi-miR-16c-3p

Accession	MIMAT0037637
Description	Chrysemys picta cpi-miR-16c-3p mature miRNA
Sequence	54 - UCUCCAGUAUUGCAUUGCUGCU - 75
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196