miRBase entry: cpi-mir-20a

Stem-loop cpi-mir-20a

Accession

MI0029407

Description

Chrysemys picta cpi-mir-20a precursor miRNA

Sequence

gacagcuccuguaguacUAAAGUGCUUAUAGUGCAGGUAguguucaguaaucuACUGCAUUAUGAGCACUUAAAGuacugcuagcuguagaa
.((((((...((((((((.(((((((((((((((((.(((...........))))))))))))))))))))..)))))))).))))))....

Structure

---g      ccu        -A                 G   uguu 
    acagcu   guaguacU  AAGUGCUUAUAGUGCAG UAg    c
    ||||||   ||||||||  ||||||||||||||||| |||    a
    ugucga   cgucauGA  UUCACGAGUAUUACGUC Auc    g
aaga      --u        AA                 -   uaau

Annotation confidence Not enough data

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Genome context

KK083096.1: 1396807-1396898 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cpi-mir-20a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-20a-5p

Accession	MIMAT0037647
Description	Chrysemys picta cpi-miR-20a-5p mature miRNA
Sequence	18 - UAAAGUGCUUAUAGUGCAGGUA - 39
Evidence	experimental Illumina [1]

Mature cpi-miR-20a-3p

Accession	MIMAT0037648
Description	Chrysemys picta cpi-miR-20a-3p mature miRNA
Sequence	54 - ACUGCAUUAUGAGCACUUAAAG - 75
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196