miRBase entry: cpi-mir-92a-2

Stem-loop cpi-mir-92a-2

Accession

MI0029438

Description

Chrysemys picta cpi-mir-92a-2 precursor miRNA

Sequence

ugguuucuccauggGUGGGGAUUUGUUGCAUUACUuguagcuauguguagagUAUUGCACUUGUCCCGGCCUguggaggaaaggagg
...(((((((((((((.(((((..((.(((.(((((...((...))...))))).)))))..))))).)))))))))))))......

Structure

---ugg             G     UU  U   U     gua  u 
      uuucuccauggGU GGGAU  GU GCA UACUu   gc  
      ||||||||||||| |||||  || ||| |||||   || a
      aaggaggugUCCG CCCUG  CA CGU AUgag   ug  
ggagga             G     UU  -   U     aug  u

Annotation confidence Not enough data

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Genome context

KK088187.1: 4591087-4591173 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cpi-mir-92a-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-92a-3p

Accession	MIMAT0037699
Description	Chrysemys picta cpi-miR-92a-3p mature miRNA
Sequence	53 - UAUUGCACUUGUCCCGGCCU - 72
Evidence	experimental Illumina [1]

Mature cpi-miR-92a-2-5p

Accession	MIMAT0037700
Description	Chrysemys picta cpi-miR-92a-2-5p mature miRNA
Sequence	15 - GUGGGGAUUUGUUGCAUUACU - 35
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196