miRBase entry: cpi-mir-92a-2

Stem-loop cpi-mir-92a-2


Accession
MI0029438
Description
Chrysemys picta cpi-mir-92a-2 precursor miRNA


Sequence

1064124 reads, 12891.0 reads per million, 12 experiments
ugguuucuccauggGUGGGGAUUUGUUGCAUUACUUguagcuauguguagagUAUUGCACUUGUCCCGGCCUGUggaggaaaggagg
...(((((((((((((.(((((..((.(((.(((((...((...))...))))).)))))..))))).)))))))))))))......

Structure
---ugg             G     UU  U   U     gua  u 
      uuucuccauggGU GGGAU  GU GCA UACUU   gc  
      ||||||||||||| |||||  || ||| |||||   || a
      aaggaggUGUCCG CCCUG  CA CGU AUgag   ug  
ggagga             G     UU  -   U     aug  u 


Annotation confidence High
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Genome context
KK088187.1: 4591087-4591173 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from cpi-mir-92a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-miR-92a-2-5p

Accession MIMAT0037700
Description Chrysemys picta cpi-miR-92a-2-5p mature miRNA
Sequence 15 - GUGGGGAUUUGUUGCAUUACUU - 36
Evidence experimental
Illumina [1]

Mature cpi-miR-92a-3p

Accession MIMAT0037699
Description Chrysemys picta cpi-miR-92a-3p mature miRNA
Sequence 53 - UAUUGCACUUGUCCCGGCCUGU - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196