Stem-loop cpi-mir-99b

Accession

MI0029445

Description

Chrysemys picta cpi-mir-99b precursor miRNA

Sequence

cguugccgguugccauaAACCCGUAGAUCCGAACUUGCGguacgacugccucacaCAAGCUCGAGUCUGUGGGUAugugucgauccuggccagg
....((((((((.((((.((((((((((.(((.((((.((((....)))).....)))).))).)))))))))).)))).))).)).)))....

Structure

cguu   -  -   c    A          C   A    ----C    c 
    gcc gg uug caua ACCCGUAGAU CGA CUUG     Ggua g
    ||| || ||| |||| |||||||||| ||| ||||     ||||  
    cgg cc agc gugu UGGGUGUCUG GCU GAAC     ccgu a
ggac   u  u   u    A          A   C    acacu    c 

Annotation confidence Not enough data

Genome context

KK083354.1: 287396-287489 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cpi-mir-99b

Mature cpi-miR-99b-5p

• Accession: MIMAT0037712
• Description: Chrysemys picta cpi-miR-99b-5p mature miRNA
• Sequence: 18 - AACCCGUAGAUCCGAACUUGCG - 39
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-99b-3p

• Accession: MIMAT0037713
• Description: Chrysemys picta cpi-miR-99b-3p mature miRNA
• Sequence: 56 - CAAGCUCGAGUCUGUGGGUA - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196