Stem-loop cpi-mir-125a

Accession

MI0029459

Description

Chrysemys picta cpi-mir-125a precursor miRNA

Sequence

ggcagccgucucugUCCCUGAGACCCUUAACCUGUGagggcagcgcagaauucACAGGUGAGGUUCUUGGGAACCgagcgacuggccc
(((((.((.(((.((.(((((((.(((((.((((((((..(......)..))))))))))))).))))))).)).))))).)).))).

Structure

-   -  c  u   u  C       C     A        gg ag 
 ggc ag cg cuc gU CCUGAGA CCUUA CCUGUGag  c  c
 ||| || || ||| || ||||||| ||||| ||||||||  |   
 ccg uc gc gag CA GGGUUCU GGAGU GGACAcuu  g  g
c   g  a  -   C  A       U     -        aa ac 

Annotation confidence Not enough data

Genome context

KK083354.1: 295798-295885 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cpi-mir-125a

Mature cpi-miR-125a-5p

• Accession: MIMAT0037728
• Description: Chrysemys picta cpi-miR-125a-5p mature miRNA
• Sequence: 15 - UCCCUGAGACCCUUAACCUGUG - 36
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-125a-3p

• Accession: MIMAT0037729
• Description: Chrysemys picta cpi-miR-125a-3p mature miRNA
• Sequence: 54 - ACAGGUGAGGUUCUUGGGAACC - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196