Stem-loop cpi-mir-125b-2

Accession

MI0029461

Description

Chrysemys picta cpi-mir-125b-2 precursor miRNA

Sequence

cggacuuuuccuagUCCCUGAGACCCUAACUUGUGAgguuuuuuagcaacaaucACAAGUCAGGCUCUUGGGACCUaggcggaggggaacca
....((((.(((((((((.((((.(((.((((((((.(((.......)))..)))))))).))).)))))))).))))).))))........

Structure

----cgga    u     -    U    C   A        -g   uu 
        cuuu ccuag UCCC GAGA CCU ACUUGUGA  guu  u
        |||| ||||| |||| |||| ||| ||||||||  |||  u
        gagg ggaUC AGGG UUCU GGA UGAACAcu  caa  a
accaaggg    c     C    -    C   C        aa   cg 

Annotation confidence Not enough data

Genome context

KK088228.1: 9048824-9048915 [+]

Mature cpi-miR-125b-5p

• Accession: MIMAT0037730
• Description: Chrysemys picta cpi-miR-125b-5p mature miRNA
• Sequence: 15 - UCCCUGAGACCCUAACUUGUGA - 36
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-125b-2-3p

• Accession: MIMAT0037732
• Description: Chrysemys picta cpi-miR-125b-2-3p mature miRNA
• Sequence: 55 - ACAAGUCAGGCUCUUGGGACCU - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196