Stem-loop cpi-mir-204-3

Accession

MI0029530

Description

Chrysemys picta cpi-mir-204-3 precursor miRNA

Sequence

ccggugcgcccugugagcUUCCCUUUGUCAUCCUAUGCCUgagagaugccuggagGCUGGGACGGUGAAGGGAAGCccacguggcugccaa
..((((.(((.((((.(((((((((((((.(((((.((((.((......))..))))))))).))))))))))))).)))).)))))))..

Structure

cc    c   c    a             A     U    -g  ag 
  ggug gcc ugug gcUUCCCUUUGUC UCCUA GCCU  ag  a
  |||| ||| |||| ||||||||||||| ||||| ||||  ||   
  ccgu cgg gcac CGAAGGGAAGUGG AGGGU CGga  uc  u
aa    -   u    c             C     -    gg  cg 

Annotation confidence Not enough data

Genome context

KK082985.1: 2910505-2910595 [-]

Mature cpi-miR-204-5p

• Accession: MIMAT0037827
• Description: Chrysemys picta cpi-miR-204-5p mature miRNA
• Sequence: 19 - UUCCCUUUGUCAUCCUAUGCCU - 40
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-204-3-3p

• Accession: MIMAT0037829
• Description: Chrysemys picta cpi-miR-204-3-3p mature miRNA
• Sequence: 56 - GCUGGGACGGUGAAGGGAAGC - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196