miRBase entry: cpi-mir-16b

Stem-loop cpi-mir-16b

Accession

MI0029636

Description

Chrysemys picta cpi-mir-16b precursor miRNA

Sequence

uauacucguuccgcccUAGCAGCACGUAAAUAUUGGUGuaguaaaguaaaucuuaaaccCCAAUAUUAUUGUGCUGCUUAAgcguggcaga
.......(((.(((...(((((((((..((((((((.((....(((.....)))..)).))))))))..)))))))))...))).)))...

Structure

uauacuc   c   ccU         UA        U  agua   u 
       guu cgc   AGCAGCACG  AAUAUUGG Gu    aag a
       ||| |||   |||||||||  |||||||| ||    ||| a
       cgg gcg   UCGUCGUGU  UUAUAACC ca    uuc a
----aga   u   AAU         UA        c  --aa   u

Annotation confidence Not enough data

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Genome context

KK088236.1: 7080517-7080607 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-16b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-16b-5p

Accession	MIMAT0037994
Description	Chrysemys picta cpi-miR-16b-5p mature miRNA
Sequence	17 - UAGCAGCACGUAAAUAUUGGUG - 38
Evidence	experimental Illumina [1]

Mature cpi-miR-16b-3p

Accession	MIMAT0037995
Description	Chrysemys picta cpi-miR-16b-3p mature miRNA
Sequence	60 - CCAAUAUUAUUGUGCUGCUUAA - 81
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196