miRBase entry: ami-mir-10c

Stem-loop ami-mir-10c


Accession
MI0029665
Description
Alligator mississippiensis ami-mir-10c precursor miRNA


Sequence

cacagucgccuauauguACCCUGUAGAAUCGAAUUUGUGugaacauuucagagucACAAAUUCGUCUCUAGGGGAAuauauggacgaugc
....((((.((((((((.((((.((((..((((((((((((((...))))....))))))))))..)))))))).)))))))).))))..

Structure
caca    c        A    G    AU          ----    c 
    gucg cuauaugu CCCU UAGA  CGAAUUUGUG    ugaa  
    |||| |||||||| |||| ||||  ||||||||||    |||| a
    uagc gguauauA GGGG AUCU  GCUUAAACAc    acuu  
--cg    a        A    -    CU          ugag    u 


Annotation confidence Not enough data
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Genome context
AKHW03000840.1: 346301-346390 [+]

Database links

Mature ami-miR-10c-5p

Accession MIMAT0038034
Description Alligator mississippiensis ami-miR-10c-5p mature miRNA
Sequence 18 - ACCCUGUAGAAUCGAAUUUGUG - 39
Evidence experimental
Illumina [1]

Mature ami-miR-10c-3p

Accession MIMAT0038035
Description Alligator mississippiensis ami-miR-10c-3p mature miRNA
Sequence 56 - ACAAAUUCGUCUCUAGGGGAA - 76
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196