Stem-loop ami-mir-99a

Accession

MI0029708

Description

Alligator mississippiensis ami-mir-99a precursor miRNA

Sequence

gugccaguuggcauaAACCCGUAGAUCCGAUCUUGUGguaaaauacaccacaCAAGCUCGCUUCUAUGGGUCUGugucagugugguuauc
..((((.((((((((.(((((((((..(((.((((((.............)))))).)))..))))))))).))))))))..))))....

Structure

--gu    -g        A         UC   U      guaaa 
    gcca  uuggcaua ACCCGUAGA  CGA CUUGUG     a
    ||||  |||||||| |||||||||  ||| ||||||     u
    uggu  gacuguGU UGGGUAUCU  GCU GAACac     a
cuau    gu        C         UC   C      accac 

Annotation confidence Not enough data

Genome context

AKHW03006231.1: 37234781-37234870 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ami-mir-99a

Mature ami-miR-99a-5p

• Accession: MIMAT0038110
• Description: Alligator mississippiensis ami-miR-99a-5p mature miRNA
• Sequence: 16 - AACCCGUAGAUCCGAUCUUGUG - 37
• Evidence: experimental ; Illumina [1]

Mature ami-miR-99a-3p

• Accession: MIMAT0038111
• Description: Alligator mississippiensis ami-miR-99a-3p mature miRNA
• Sequence: 53 - CAAGCUCGCUUCUAUGGGUCUG - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196