Stem-loop ami-mir-99b

Accession

MI0029709

Description

Alligator mississippiensis ami-mir-99b precursor miRNA

Sequence

gccugccggucgccauaAACCCGUAGAUCCGAACUUGCGgucgcuccucgugCAAGCUCGACUCUGUGGGUCUGugucggccucggccu
....((((((((.((((.(((((((((..(((.((((((...........)))))).)))..))))))))).)))).)))))..)))..

Structure

gccu   --     c    A         UC   A      gucg 
    gcc  ggucg caua ACCCGUAGA  CGA CUUGCG    c
    |||  ||||| |||| |||||||||  ||| ||||||    u
    cgg  ccggc guGU UGGGUGUCU  GCU GAACgu    c
--uc   cu     u    C         CA   C      gcuc 

Annotation confidence Not enough data

Genome context

AKHW03006683.1: 238448-238536 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ami-mir-99b

Mature ami-miR-99b-5p

• Accession: MIMAT0038112
• Description: Alligator mississippiensis ami-miR-99b-5p mature miRNA
• Sequence: 18 - AACCCGUAGAUCCGAACUUGCG - 39
• Evidence: experimental ; Illumina [1]

Mature ami-miR-99b-3p

• Accession: MIMAT0038113
• Description: Alligator mississippiensis ami-miR-99b-3p mature miRNA
• Sequence: 53 - CAAGCUCGACUCUGUGGGUCUG - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196